PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00357g00431.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 149aa    MW: 16603.6 Da    PI: 8.4561
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00357g00431.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.5e-115981527
                              --SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                               C++f rtG+C+yGd+Ck+ H++
  Peaxi162Scf00357g00431.1 59 VCNHFVRTGYCQYGDSCKYYHPK 81
                              7********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004512.8E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576673.57E-15448No hitNo description
PfamPF062201.1E-9538IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.9625482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-85582IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-75581IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-55681IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-85881IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MPVGKYYCDY CDKEFQDTAA ARKRHLQGVQ HQRAKALWYN SLSNSQLYND PNAFGKKGVC  60
NHFVRTGYCQ YGDSCKYYHP KQNSQTVNQM GLPPGTNVRE GIHLKTVPNS QPFGDMFGEN  120
AAASLGNLPP SLQPPPEGGY PSLPFVDWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615872.15e-92PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
RefseqXP_016458837.15e-92PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ0JP113e-44C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0V0HLG09e-85A0A0V0HLG0_SOLCH; Putative zinc finger CCCH domain-containing protein 3-like
STRINGSolyc01g100990.2.11e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.17e-47C3H family protein